Import MicrobiotaProcess object for PARAFAC modelling

Usage

importMicrobiotaProcess(MPobject, subjectIDs, thirdMode, taxa_are_rows = TRUE)

Arguments

MPobject: MicrobiotaProcess object containing at least an OTU table and sample information, preferably also taxonomic information.
subjectIDs: Column name in the sample information corresponding to the subject IDs.
thirdMode: Column name in the sample information corresponding to the study design aspect to put in the third mode of the data cube.
taxa_are_rows: Boolean specifying if the taxa are in the rows of the OTU table (TRUE) or not (FALSE).

Value

List object containing:

'data': data cube
'mode1': metadata of the subject mode
'mode2': taxonomy information
'mode3': metadata of the third mode

Examples

if (FALSE) { # \dontrun{
library(MicrobiotaProcess)
data("mouse.time.mpse")
importMicrobiotaProcess(mouse.time.mpse, subjectIDs = "Sample",
                        thirdMode = "time", taxa_are_rows = TRUE)
} # }