Publications

First authorships

  • van der Ploeg, G. R., White, F. T. G., Jakobsen, R. R., Westerhuis, J., Heintz-Buschart, A., & Smilde, A. (2025). ACMTF-R: supervised multi-omics data integration uncovering shared and distinct outcome-associated variation. bioRxiv, 2025-07. https://doi.org/10.1101/2025.07.28.667162

  • van der Ploeg, G. R., Brandt, B. W., Keijser, B. J. F., Van Der Veen, M. H., Volgenant, C. M. C., Zaura, E., Smilde, A. K., Westerhuis, J. A., & Heintz-Buschart, A. (2024). Multi-way modelling of oral microbial dynamics and host-microbiome interactions during induced gingivitis. Npj Biofilms And Microbiomes, 10(1). https://doi.org/10.1038/s41522-024-00565-x

  • van der Ploeg, G. R., Westerhuis, J., Heintz-Buschart, A., & Smilde, A. (2024). parafac4microbiome: Exploratory analysis of longitudinal microbiome data using Parallel Factor Analysis. mSystems, 10(6), e00472-25. 2024-05. https://doi.org/10.1128/msystems.00472-25

Joint first authorships

  • Jakobsen, R. R.*, van der Ploeg, G. R.* , Sundekilde, U. K., Astono, J., Poulsen, K. O., Fuglsang, J., Westerhuis, J. A., Heintz-Buschart, A. Smilde, A. K., Nielsen, D. S. (2025). Supervised Modelling of Longitudinal Human Milk and Infant Gut Microbiome Reveal Maternal Pre-Pregnancy BMI and Early Life Growth Interactions. Research Square, 31 March 2025. https://doi.org/10.21203/rs.3.rs-6244750/v1

  • Cornejo Ulloa, P.*, van der Ploeg, G. R.* , Heintz-Buschart, A., Westerhuis J. A., Smilde, A. K., Zaura, E., Brandt, B. W., Buijs, M. J., Bostanci, N., Silbereisen, A., Bikker, F. J., Nazmi, K., Tebbens, M., van der Heijer, M., Krom, B. P., van der Veen, M. H. (2025). Shifting Hormones, Shaping Health: Gender-Affirming Therapy & Oral Care. International Journal of Transgender Health, 1-17. https://doi.org/10.1080/26895269.2025.2549794

  • Georgiou, A. C.*, van der Ploeg, G. R.* , Westerhuis, J. A., van der Waal, S. V., Heintz-Buschart A., Smilde, A. K., Brandt, B. W. (2025). Multi-way modelling of the microbiome in relation to inflammatory response of apical periodontitis in blood. International Endodontic Journal, 1-14. https://doi.org/10.1111/iej.70023

Co-authorships

  • Westerhuis, J. A., Heintz-Buschart, A., Hoefsloot, H. C. J., van der Kloet, F. M., van der Ploeg, G. R., White, F. T. G. (2025). Comparison of Chemometric Explorative Multi-Omics Data Analysis Methods Applied to a Mechanistic Pan-Cancer Cell Model. Journal of Chemometrics, 39(2):e70001. https://doi.org/10.1002/cem.70001
  • Albracht, C., Solbach, M. D., Hennecke, J., Bassi, L., van der Ploeg, G. R., Eisenhauer, N., … & Heintz-Buschart, A. (2024). Common soil history is more important than plant history for arbuscular mycorrhizal community assembly in an experimental grassland diversity gradient. Biology and Fertility of Soils, 1-16. https://doi.org/10.1007/s00374-024-01821-0